PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.YV6SQ
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 566aa    MW: 63716.6 Da    PI: 5.1848
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.YV6SQgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.56.5e-08461508347
                      SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                       WT++++++++d+vk  ++      W+ I + ++ ++++++++s+++++
      Aradu.YV6SQ 461 LWTEDDEKKFKDVVKSNPPSlekcFWDQIFKSFP-TKSREDLVSYYFNV 508
                      5*****************88**************.***********996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5101117.89165IPR001606ARID DNA-binding domain
Gene3DG3DSA:1.10.150.603.1E-13271IPR001606ARID DNA-binding domain
SMARTSM005018.4E-5266IPR001606ARID DNA-binding domain
SuperFamilySSF467743.4E-15373IPR001606ARID DNA-binding domain
PfamPF013883.3E-8460IPR001606ARID DNA-binding domain
SMARTSM011898.1E-5363413IPR000949ELM2 domain
SMARTSM007172.7E-4458511IPR001005SANT/Myb domain
PfamPF002493.6E-6461508IPR001005SANT/Myb domain
CDDcd001673.31E-5462509No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010628Biological Processpositive regulation of gene expression
GO:0016575Biological Processhistone deacetylation
GO:0048235Biological Processpollen sperm cell differentiation
GO:0000118Cellular Componenthistone deacetylase complex
GO:0048555Cellular Componentgenerative cell nucleus
GO:0048556Cellular Componentmicrosporocyte nucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MMCSGEPLDL YKLFMVVKEK GGYDAVCKNM LWDLVAEEYG LGLNVGSSIE LVYSKHLSTL  60
ETWLKNVADS KFPECGLMDD RVSFGKKLME VQADFLLDVY SEEGAGDKIK TVCDFADGRK  120
LCGTNRVRGL NPELSGAKKI VDLNALDHKI NGPSIGSFCS NNFSNNSSDI QNHLNEIKTS  180
TVDISDEANI MPTLSEEGDS CDKNDGHDDD DDDDDDVMVL DPSTVNKESF GRKRKRESMS  240
EMLSWLTGIA KNPCDPAVGS MPEKSKWKSY GSEEIWKQVL LFRQATYFSS DHVSWQSQKM  300
HPCMYDDQVG ANYNLRERLK SDKNLTCGVS SNMGGIQGGS ERNPSPHSEV EKLLLDQCSM  360
VPIPVGPSHQ AEVPEWTGVA IESDSKWLGS QIWPSAEIKS KVIERDPIGA GRKDSCGCEV  420
QGSVECVRFH IAQKRAKVKL ELGVAFYLWN LHKTGEDVRR LWTEDDEKKF KDVVKSNPPS  480
LEKCFWDQIF KSFPTKSRED LVSYYFNVFI LQRRGYQNRN TPDDIDSDDD ESEYGPLKNA  540
FGHQTHRSRN ITLLSPKKPK KTEHSK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015961917.10.0PREDICTED: AT-rich interactive domain-containing protein 1-like
RefseqXP_015961918.10.0PREDICTED: AT-rich interactive domain-containing protein 1-like
TrEMBLQ2HUC60.0Q2HUC6_MEDTR; AT-rich interactive domain protein
STRINGGLYMA09G39361.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43731724